mdreg.skimage.coreg

mdreg.skimage.coreg(moving: ndarray, fixed: ndarray, **kwargs)

Coregister two arrays

Parameters:

• moving (numpy.ndarray) – The moving image with dimensions (x,y) or (x,y,z).

• fixed (numpy.ndarray) – The fixed target image with the same shape as the moving image.

• kwargs (dict) – Any keyword argument accepted by skimage.optical_flow_tvl1.

Returns:

• coreg (numpy.ndarray) – Coregistered image in the same shape as the moving image.

• deformation (numpy.ndarray) – Deformation field in the same shape as the moving image - but with an additional dimension at the end for the components of the deformation vector.